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Colonialism, the Flexner Report, and the Transformation of Traditional Medicine: A Historical Perspective

Ogbuefi Ndigbo, Senior Correspondent by Ogbuefi Ndigbo, Senior Correspondent
July 9, 2026
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Traditional medicines in Nigeria

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 TD The relationship between traditional medicine, colonialism, and modern scientific medicine remains one of the most contested subjects in medical history.

Across Africa, Asia, and the Americas, indigenous healing systems sustained communities for centuries before the rise of modern biomedical institutions.

During the late nineteenth and early twentieth centuries, however, profound political, educational, and scientific changes reshaped the practice of medicine.

Among the most influential developments was the publication of the Flexner Report in the United States in 1910 and the simultaneous expansion of European colonial rule across Africa.

Together, these developments transformed medical education, elevated scientific medicine, and marginalized many traditional healing practices.

Although some contemporary commentators argue that these changes were driven primarily by commercial interests in pharmaceutical patents, the historical record presents a more complex picture.

In 1910, American educator Abraham Flexner published Medical Education in the United States and Canada, a report commissioned by the Carnegie Foundation for the Advancement of Teaching.

Flexner was not a physician but an experienced educational reformer tasked with evaluating the quality of medical schools.

His report criticized the poor standards of many proprietary medical colleges and advocated for rigorous scientific training, laboratory research, anatomy, pathology, bacteriology, and clinical education in university-affiliated teaching hospitals.

The report fundamentally reshaped medical education in North America.

Within the following decades, many medical schools either closed or merged, and admission standards became significantly more demanding.

These reforms improved scientific rigor and helped establish modern evidence-based medicine. However, they also produced unintended consequences.

Schools specializing in homeopathy, eclectic medicine, and other alternative traditions largely disappeared.

Orthodox medicine versus Traditional medicines in Nigeria
Orthodox medicine versus Traditional medicines in Nigeria

The report’s implementation also disproportionately affected African American medical education, leading to the closure of five of the seven Black medical schools then operating in the United States.

Only Howard University College of Medicine and Meharry Medical College survived, limiting opportunities for Black physicians for generations.

The Flexner reforms coincided with substantial philanthropic investment from organizations such as the Carnegie Foundation and the Rockefeller Foundation.

These institutions helped finance universities, research laboratories, hospitals, and public health programmes that became the foundation of twentieth-century biomedical science.

While critics argue that these investments paved the way for the growth of the pharmaceutical industry, historians have found no convincing evidence that the reforms were designed primarily to eliminate plant-based medicine because plants could not be patented.

Rather, the reforms reflected the growing influence of laboratory science and the belief that medicine should be grounded in experimental evidence.

Importantly, the rise of scientific medicine did not eliminate the medical use of plants. Many of the world’s most important medicines originated from traditional herbal knowledge.

Quinine, derived from the bark of the cinchona tree, transformed the treatment of malaria.

Morphine came from the opium poppy, digoxin from foxglove, aspirin from compounds first identified in willow bark, and more recently artemisinin, isolated from the Chinese herb Artemisia annua, has become one of the world’s most effective antimalarial drugs.

Traditional knowledge has therefore continued to play a significant role in pharmaceutical discovery, even when active compounds have later been isolated, standardized, and manufactured industrially.

While American medicine was undergoing reform, British colonial rule was expanding across Nigeria.

Colonial authorities sought to establish political control, reorganize indigenous institutions, and introduce European systems of administration, law, religion, and healthcare.

The Aro Expedition of 1901–1902, which resulted in the destruction of the influential Ibini Ukpabi oracle at Arochukwu, symbolized the colonial assault on traditional political and religious authority in southeastern Nigeria.

Throughout the colonial period, legislation targeting witchcraft, trial by ordeal, and certain indigenous religious practices further weakened traditional institutions.

Missionary organizations also played a significant role by condemning many indigenous religious beliefs as pagan or demonic.

Shrines were destroyed, sacred objects confiscated, and many traditional practitioners found themselves caught between colonial law and missionary hostility.

Although these measures primarily targeted spiritual practices rather than herbal medicine itself, the distinction was often blurred because healing, religion, and community life were deeply interconnected in many Nigerian societies.

For many communities, the consequence was that aspects of indigenous healing became increasingly marginalized.

Practices once conducted openly under communal supervision sometimes moved into private spaces, where they were less visible and less accountable.

Some historians argue that this contributed to the emergence of fraudulent practitioners who claimed traditional authority without the customary systems of apprenticeship and communal regulation that had previously governed indigenous medicine.

While this interpretation remains debated, it highlights the unintended social consequences that can follow when long-established institutions are disrupted.

Despite colonial suppression, traditional medicine never disappeared.

The World Health Organization continues to recognise that traditional medicine remains an essential source of healthcare for millions of Africans.

In many rural communities, herbal medicine is often the first point of treatment because it is accessible, affordable, culturally familiar, and locally available.

Increasingly, governments and researchers are exploring ways to evaluate traditional remedies scientifically while ensuring quality, safety, and efficacy.

The experiences of China and India demonstrate one possible model for integrating traditional medicine into national healthcare systems.

Rather than abandoning their ancient medical traditions, both countries invested in research, regulation, education, and professional training.

Traditional Chinese Medicine and Ayurveda today exist alongside conventional biomedical practice, contributing to healthcare, research, and economic development.

Their experience suggests that indigenous medical knowledge can coexist with modern science when subjected to rigorous standards of evaluation.

Nigeria possesses one of the richest traditions of medicinal knowledge in Africa.

Countless medicinal plants continue to be used by communities, many of which remain scientifically under-researched.

Preserving this knowledge does not require rejecting modern medicine. Instead, it calls for careful documentation, clinical research, standardisation, and regulation.

Genuine traditional practitioners should be distinguished from fraudsters and criminals who misuse cultural beliefs for personal gain.

Scientific investigation should determine which remedies are safe and effective while protecting valuable indigenous knowledge from being lost.

The history of medicine is therefore neither a story of absolute progress nor one of deliberate destruction.

It is a complex narrative shaped by scientific discovery, colonial power, economic interests, philanthropy, religious change, and cultural conflict.

The Flexner reforms undeniably transformed medical education and improved scientific standards, but they also contributed to the decline of many alternative medical traditions.

Colonial rule undoubtedly undermined many indigenous African institutions, including aspects of traditional healing, although the motivations behind these policies were varied and cannot be reduced to a single economic conspiracy.

Understanding this history encourages a more balanced approach to healthcare today.

Rather than framing modern medicine and traditional medicine as enemies, societies can recognise that both have valuable contributions to make.

By combining scientific research with respect for indigenous knowledge, countries such as Nigeria can preserve their cultural heritage while improving public health.

The challenge for the future is not to return uncritically to the past, nor to dismiss traditional knowledge outright, but to build a healthcare system that values evidence, respects history, and serves the needs of all people.

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